There are two directories: (1). mmPredict contains predictions  based on phenotype similarities; (2) mmPredict_gene contains predictions  based on genetic similarity.

1. mmPredict
(a). omim_STITCH.output
Predictions using PSO genetics from the OMIM database and chemical/metabolite-gene associations from STITCH database. This file contains  a list of 259170 chemicals/metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

(b) omim_STITCH_in_HMDB.output
Predictions using PSO genetics from the OMIM database and chemical/metabolite-gene associations from STITCH database. The list was then filted by metabolites from HMDB. This file contains  a list of 4057 metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

(c) omim_STITCH_in_HMDB_endogenous.output
Predictions using PSO genetics from the OMIM database and chemical/metabolite-gene associations from STITCH database. The list was then filted by endogenous metabolites from HMDB. This file contains  a list of 2067 metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score


(d). gwas_STITCH.output
Predictions using PSO genetics from the GWAS catalog and chemical/metabolite-gene associations from STITCH database. This file contains  a list of 259170 chemicals/metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

(e) gwas_STITCH_in_HMDB.output
Predictions using PSO genetics from the the GWAS catalog and chemical/metabolite-gene associations from STITCH database. The list was then filted by metabolites from HMDB. This file contains  a list of 4057 metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

(f) gwas_STITCH_in_HMDB_endogenous.output
Predictions using PSO genetics from the the GWAS catalog and chemical/metabolite-gene associations from STITCH database. The list was then filted by endogenous metabolites from HMDB. This file contains  a list of 2067 metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

==============

1. mmPredict_gene
(a). omim_STITCH.output
Predictions using PSO genetics from the OMIM database and chemical/metabolite-gene associations from STITCH database. This file contains  a list of 259170 chemicals/metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

(b) omim_STITCH_in_HMDB.output
Predictions using PSO genetics from the OMIM database and chemical/metabolite-gene associations from STITCH database. The list was then filted by metabolites from HMDB. This file contains  a list of 4057 metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

(c) omim_STITCH_in_HMDB_endogenous.output
Predictions using PSO genetics from the OMIM database and chemical/metabolite-gene associations from STITCH database. The list was then filted by endogenous metabolites from HMDB. This file contains  a list of 2067 metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score


(d). gwas_STITCH.output
Predictions using PSO genetics from the GWAS catalog and chemical/metabolite-gene associations from STITCH database. This file contains  a list of 259170 chemicals/metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

(e) gwas_STITCH_in_HMDB.output
Predictions using PSO genetics from the the GWAS catalog and chemical/metabolite-gene associations from STITCH database. The list was then filted by metabolites from HMDB. This file contains  a list of 4057 metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score

(f) gwas_STITCH_in_HMDB_endogenous.output
Predictions using PSO genetics from the the GWAS catalog and chemical/metabolite-gene associations from STITCH database. The list was then filted by endogenous metabolites from HMDB. This file contains  a list of 2067 metablites ranked for the input disease "psoriasis"

format:
chemical/disease|ranking score